News2012-2016

The paper on the MD simulations of a bacterial cytoplasm has been published in eLife.

The paper by Dr. Suyong Re has been published in J. Phys. Chem. C.

Dr. Ai Niitsu (Postdoctoral Researcher) has joined to our group.

GENESIS 1.1.0 has just been released! More

GENESIS website has been renewed! More

Dr. Hiraku Oshima (Postdoctoral Researcher) has joined to our group.

Dr. Suyong Re has joined to our group.

Dr. Tadashi Ando moved to Tokyo University of Science.

Seminar Announcement : Prof. Edmond Chow (Georgia Institute of Technology) Dec. 8th, 2015 (Kobe, QBiC) More

Laboratory moved to RIKEN Integrated Innovation Building (IIB).

Dr. Yumi Kashihara moved.

Congratulations to Dr. Naoyuki Miyashita, who was offered an associate professor position at the Kinki University. Good luck!.

“REIN: Replica-exchange INterface for simulating protein dynamics and function” was published in nt. J. Quantum Chem.

Dr. Yasuhito Karino (Postdoctral Researcher) has moved.

HP about Replica-Exchange molecular dynamics INterface (REIN) has been updated. More

We attended the 4th QBiC Retreat. (6/23-25,Kisyu Minabe Royal Hotel, Wakayama)

Dr. Yasushi Okada (RIKEN QBiC) gave a seminar in Kobe.

Prof. Akihiro Kusumi (Kyoto Univ.) gave a seminar in Kobe.

Dr. Sugita organized “Workshop on Molecular Simulations of Biophysics and Biochemistry”. More

“Surface-Tension Replica-Exchange Molecular Dynamics Method for Enhanced Sampling of Biological Membrane Systems” was published in J. Chem. Theory Comput.

Dr. Sugita organized “Workshop on Modeling Biomolecular Systems in Cellular Environment”. More

Dr. Sugita organized a symposium at the 51th Annual Meeting of the Biophysical Society of Japan.

Dr. Tadashi Ando (Research Scientist) joined our group.

Dr. Takeshi Sato (Osaka Univ.) gave a seminar in Kobe.

Dr. Kashihara won the Woman’s first award in QBiC Retreat.

We attended the third QBiC Retreat. (International Conference Center, Awaji Yumebutai, Hyogo)

Dr. Yumi Kashihara (Postdoctral Researcher) joined our group.

Dr. Takaharu Mori (Special Postdoctral Researcher) moved to Theoretical Molecular Science Laboratory, RIKEN.

“Reduced Native State Stability in Crowded Cellular Environment Due to Protein–Protein Interactions” was published in J. Am. Chem. Soc.

We released Replica-exchange molecular dynamics interface (REIN).

We are looking for a few postdoctoral fellows or research scientists. (closed)

RIKEN QBiC Inaugural Symposium “Towards Whole-Cell Modeling” was held.

A new homepage of Laboratory for Biomolecular Function Simulation is opened.

Dr. Sugita organized a symposium at the 50th Annual Meeting of the Biophysical Society of Japan.

“Effect of Bisecting GlcNAc and Core Fucosylation on Conformational Properties of Biantennary Complex-Type N-Glycans in Solution” was published in Biophys. Rev.

We attended the second QBiC Retreat. (International Conference Center, Awaji Yumebutai, Hyogo)

Dr. Yasuhito Karino (Postdoctral Researcher) joined our group.

Dr. Kohsuke Inomata (RIKEN QBiC) gave a seminar in Kobe.

“Conformational flexibility of N-glycans in solution studied by REMD simulations” was published in J. Phys. Chem. B.

Dr. Yasuhito Karino (Kyoto University) gave a seminar in Kobe.

Dr. Takashi Imai (Senior Scientist) left our group.

“The Intertransmembrane Region of Kaposi’s Sarcoma-Associated Herpesvirus Modulator of Immune Recognition 2 Contributes to B7-2 Downregulation” was published in J. Viol.

“Protein Crowding Affects Hydration Structure and Dynamics” was published in J. Am. Chem. Soc.

“Analysis of lipid surface area in protein-membrane systems combining voronoi tessellation and monte carlo integration methods” was published in J. Comp. Chem.

Our laboratory moved to the IMDA building.

“Variable Interactions between Protein Crowders and Biomolecular Solutes are Important in Understanding Cellular Crowding” was published inJ. Phys. Chem. B.